009068e085468e1f52594402cf569f9e *DESCRIPTION
72872d6321f746b61acdba4bca3ac26e *NAMESPACE
ed6d9ff44df6c59f9f7a5d0fe41de0b3 *R/AllClass.R
3f997b68519bdf0a2ac844e7dc9ff693 *R/AllGeneric.R
c18cc82eec3698f76db1ceb2dcf157bf *R/LRCUSUM.runlength.R
411366bcd222b48821c7bc12f24b9c52 *R/RcppExports.R
61d58a61ff4500831f3be0fea209afa9 *R/addSeason2formula.R
aa76ffe9106f413caeca6e046077b167 *R/algo_bayes.R
cbe06603923df49f1c517230297acb9a *R/algo_call.R
be214ec6475829e4205744ac732af81a *R/algo_cdc.R
c9ca07b4861c4273ff8331615a435e82 *R/algo_cusum.R
2d1d8c60e87df10e436c1d22e0b08420 *R/algo_farrington.R
162ac37df5b177dfe84a932b6f45bc42 *R/algo_glrnb.R
32bbac6af87327df5953f881a46158fb *R/algo_hmm.R
e41d32428002e89cd00597b240b23216 *R/algo_outbreakP.R
7e59e5a1fd0c57754e6f123e04014da9 *R/algo_rki.R
5296b3656bc846b6ee78433a0783a604 *R/algo_rogerson.R
903711545e0576a88a63ccb7379d4489 *R/algo_twins.R
88172bb94a613e34c473ccfb218e1c92 *R/backprojNP.R
8bb8092e85c007dae55e83f700a4b6d2 *R/boda.R
1ac3496a4f5253dfda0407ccc48f0f93 *R/bodaDelay.R
b65570b14ce9f07e00a73721b088acaa *R/calibration.R
51d65e4566c1924aa1f309a9b911eb96 *R/calibration_null.R
4dccc53b6a46e9aab590a505ee678603 *R/catCUSUM.R
09b2e1ae80408fc68c5f9d6b7e87de71 *R/checkDerivatives.R
d9b04a88446501b386e9131b52de7daf *R/clapply.R
8860b75bca67188771c4c9611676ac39 *R/disProg.R
2b42bffe99b6544f9cb964972507b606 *R/earsC.R
dc266bbded6e29f5b443f534f7dad27b *R/epidata.R
0f36a7a279044ec782e6c4a0a6ea56e8 *R/epidataCS.R
951b017def4c063424a45c9878ab9398 *R/epidataCS_aggregate.R
707878ace5fab773424dc0f152f06ddf *R/epidataCS_animate.R
cfbe0ea7419d7372fc23d7638645d194 *R/epidataCS_methods.R
a5d6315c70e46592ef49afd612ca5aba *R/epidataCS_plot.R
27fd9ed1b6eef08efe073522fb14234d *R/epidata_animate.R
82fe3b6f16d0ddc0774e52dfdd98433b *R/epidata_plot.R
6dce3be79d50634e952e52cedadb9e76 *R/fanplot.R
0b37043122147467b919fbc588d84964 *R/farringtonFlexible.R
dc25e670264995ba857dd2d1252c1686 *R/formatPval.R
3b2b41811955b4d807ee2bf331fee0c0 *R/functionTable.R
9f7ac36012ccb60b1aaed07dd8d69ff1 *R/gd.R
34632c6567c644038a36a0ea076d2256 *R/glm_epidataCS.R
5a9797f6921b53e03e4368b3da08c82a *R/gpc.poly-methods.R
378e81cd40da5e64de2bea6d68a57134 *R/graphs.R
5ac56311e0679917dbeb8d9a7faea730 *R/hcl.colors.R
a629496ccf7fedf77662360e460f2f9d *R/hhh4.R
c11c0b1ab81e0953fd8cffc82571876c *R/hhh4_W.R
d1343512e15acbf5c31f1d070f40fa53 *R/hhh4_W_np.R
234dc6a175e19e5eb44064d230b55ffa *R/hhh4_W_powerlaw.R
52f4635978f1b412a7f8b7df6391a8eb *R/hhh4_amplitudeShift.R
480fbe593f41518f989aa14c24d847e4 *R/hhh4_calibration.R
fa9c9360625e42bdc5ded772ed9b9ac4 *R/hhh4_methods.R
236a816dbae38d5dd6a9dc5a939ee4bf *R/hhh4_oneStepAhead.R
7766f035e2e8d03541de5c4afae87658 *R/hhh4_plot.R
81857263bf7975a29b31da5c618835a6 *R/hhh4_simulate.R
af7dd828472c36a96a1691aa7eb69b82 *R/hhh4_simulate_plot.R
06b3c6c38ad2153300e43b14882dc00d *R/hhh4_simulate_scores.R
13a43831746902664c4e2c6507b7c671 *R/intersectPolyCircle.R
d2343ded6d3d37b1f9eff2fc6803de16 *R/isScalar.R
264aee3c6902ee22e5ebb0e1f75647c7 *R/isoWeekYear.R
97c5fe6d659c4bc619ddfe61900f13c3 *R/knox.R
9dfa1650025a4ef8cf774960c750b12b *R/ks.plot.unif.R
497c59cfb53217f850f7b74a1ae8ddf1 *R/linelist2sts.R
8ffe5f0ca294c6194526e1030e3a36ed *R/magic.dim.R
6c6ae43c0ca87d3c8de9456c7b527cc2 *R/makeControl.R
b6e047c499661bd2c2ebcec29f2e23b3 *R/newtonRaphson.R
5c38a7e5007319e3f895ad15c0b67fba *R/nowcast.R
f4fce463df5961fba2cc72e9b1480275 *R/options.R
434a538a1d66781183ae63cc632fbbc1 *R/pairedbinCUSUM.R
81c00325e893d5142480a3c48d7e2236 *R/permutationTest.R
bf97038d8ab01b8cb205c5f9c1ba9912 *R/pit.R
d889846110caef5ca462711c3feff29a *R/plapply.R
d8cf8734e2ca55edac39e76208af4d4a *R/plot.survRes.R
8273e0659e4f444c38af825fabce70a7 *R/qlomax.R
cc3a5ed9f0e3d732035a5151ca8551ae *R/scores.R
d76738240acf75767e17440185a3503a *R/sim_background.R
064d3a73fdd755280188e83d8f858945 *R/sim_pointSource.R
f5c7ebbd2b36d30ff1126c3da4b5a436 *R/spatial_tools.R
5be08cde0378959bd22199f0bffada93 *R/stK.R
586867dd964e87bae8dc1a276c4ef094 *R/stcd.R
d16c9984b4b3759880e9aa99eb978d25 *R/sts.R
51c8d382619c1f5398f98582f1a0cbaa *R/stsBP.R
b65c4afa346aeb4f73fafe9b208e8a43 *R/stsNC.R
95a4ff018cd5909c61d160dfeb4fce77 *R/stsNClist_animate.R
6eff75d8109bd58ce2c480fb224e7890 *R/sts_animate.R
f98a45d30d4bf60c069483fdc6974adc *R/sts_coerce.R
67f925ce5d0690299a87e7eb297b77b4 *R/sts_creation.R
76915d5f233d2f8667b45d6370b47381 *R/sts_ggplot.R
2c00c931f4d0fd00632767437cad2ad6 *R/sts_observation.R
e3fc5471a0507efecbd96b6abf8d69b3 *R/sts_toLatex.R
0216ced345f3eb8f8f114c8d77036b22 *R/stsplot_space.R
d9a412c9e57f532e8ce097991ff5abfc *R/stsplot_spacetime.R
99a0ff793281139487d8df9bfb1bf829 *R/stsplot_time.R
f5df5927a7d972f61e5454cede2f8811 *R/sysdata.rda
21b332280797c16407eb0d476b47e41a *R/twinSIR.R
b9b75d193bf403aac831669a2b6c7975 *R/twinSIR_helper.R
0c251c18648b2a2b03eff1a432d49698 *R/twinSIR_intensity.R
4078d9a93052f83fdd9d1dcdab1cd485 *R/twinSIR_methods.R
c3ecdbda8349faefe3c704461669f4af *R/twinSIR_profile.R
4ba759ce939d1b77a4c215883cd76f24 *R/twinSIR_simulation.R
bd9984819e6d5ec6672ef46e7ab94e41 *R/twinstim.R
40c4067a7cdd33cfbd90d3ecd2f6581d *R/twinstim_epitest.R
3b456e38e5243b78457f69fcd7837c48 *R/twinstim_helper.R
fb609b909569717c962729486d90251e *R/twinstim_iafplot.R
aa5b34374657036b2f51341267c53e9c *R/twinstim_intensity.R
9960393dac67d491ea8331b2866f6ded *R/twinstim_methods.R
54515b240b825cab036fd58f7c8f512d *R/twinstim_siaf.R
a536d26a521389ad87b7ff4b83f94e45 *R/twinstim_siaf_exponential.R
e271ccb24d65210ff04c40e0a976a12f *R/twinstim_siaf_gaussian.R
12834f83b21689e35ae4557736bafe28 *R/twinstim_siaf_polyCub_iso.R
7ce826d19f265d7ac099e6f10f05b36e *R/twinstim_siaf_powerlaw.R
1b534e06b1c3d6b9ae3aae1bf4065e98 *R/twinstim_siaf_powerlaw1.R
c3310f8d58b327255c8f1ee8995db11d *R/twinstim_siaf_powerlawL.R
ebeb46a1df317e9a471f5a64aa701f34 *R/twinstim_siaf_step.R
492ae60e071ddd690910f1137a85067f *R/twinstim_siaf_student.R
7d8f4cf39dff31c2a89ed2336ffdd520 *R/twinstim_simulation.R
848e68f6b19e146eb0d6f6fd073de56d *R/twinstim_step.R
bb161cec90325a763709d2e5fa86d7a4 *R/twinstim_tiaf.R
1bbf034dc9335443d9416e371239f4e8 *R/twinstim_tiaf_exponential.R
c007fba9f8232e06532b1021ade92094 *R/twinstim_tiaf_step.R
dc21a66dae7dc2c258dbc6a2cac5710d *R/untie.R
04418f54e798bbac2261e0789b71b8b9 *R/wrap_univariate.R
bfed3e4106e10197db51a90a6e2f327d *R/zzz.R
17cee14d7da2ca9cc61b56197a4e0066 *build/partial.rdb
5f1af4d3d76633bd18fb57f785927911 *build/vignette.rds
39cd4adbe3c05e3bed5a29e962a30724 *data/MMRcoverageDE.RData
bc57ed2de6c59d625e8ff1dc4bcc534d *data/abattoir.RData
8f11226dce910b95b8ef780e1e087340 *data/campyDE.RData
a5d19dc926e0079295e7bbb807b71183 *data/deleval.RData
74396784d70b77ce6f94f6895118168f *data/fluBYBW.RData
7f00d8ec6194adc54678c9ad5aa684a4 *data/fooepidata.RData
154bd5f0caec21664a3b42caf7990582 *data/h1_nrwrp.RData
731c70fffa23b3683391557f47000132 *data/ha.RData
f13e5e8fff2b55cb8df0169792c821eb *data/ha.sts.RData
836e9f6eb2993c4dbf7f4b975d78eb35 *data/hagelloch.RData
d86889b540c46c9b9ea2b42e5dfd3bcc *data/hepatitisA.RData
2aa9e24781d83436f2daaf4db6b788b5 *data/husO104Hosp.RData
c71fd9d76f0c2d22d4ab666525600f60 *data/imdepi.RData
73d0974a388e8c0c76d62d296fbe4118 *data/imdepifit.RData
3723c7f472e9782de2011d7885218586 *data/influMen.RData
d7e124e76fd06d35ac3de97cfb3ca0d8 *data/k1.RData
1173ed2c8b616486e274967c6a97ce8f *data/m1.RData
f4ae714001625bb89963fe0e4e2e9a77 *data/m2.RData
b21b89d9b8dab8750e93f944fc30cac1 *data/m3.RData
ec915cd8e2ce14bfd9a8de11bdba92ad *data/m4.RData
728cf151f5516831158588b57d194cd9 *data/m5.RData
b1313db9d37f054c5185cea5fc215ca0 *data/measles.weser.RData
9b38f5dd970f407ef6eb0197c9f428f8 *data/measlesDE.RData
e94e8e0396dc5e5c49abf9d28d4a092b *data/measlesWeserEms.RData
6e88fa261848741a2927e8a0208c176c *data/meningo.age.RData
32eef47d250194f5decca9c2e78126ae *data/momo.RData
0c08f2d5d556db1d91f1c6a3d3125d70 *data/n1.RData
029fff2b44242b6fc032dd4abb839207 *data/n2.RData
9b33e305674dc2bd24e465592a88e4e1 *data/q1_nrwh.RData
f19779c068198733db7f1c95cecc19db *data/q2.RData
8f41ddc82674072f51517b573007112f *data/rotaBB.RData
66338d480d9d6f7541d6b7f5690f1c94 *data/s1.RData
08135e0c5091d08becc0ceb7bb3bb3c4 *data/s2.RData
a24280cb563d545fa1f547b5c0959962 *data/s3.RData
e6867f5f8b49d82d5d56a6ba21bc79bc *data/salmAllOnset.RData
7090e08b0233c23ad3f7e77f9375ac4a *data/salmHospitalized.RData
177f82cfd139402fd4c68014c65faf46 *data/salmNewport.RData
ebc818bb58803591f7ade0b04d956926 *data/salmonella.agona.RData
f976fafb219fc04b750e0e4117ba054c *data/shadar.RData
c68d5433a3091d766465ac1990b4f697 *data/stsNewport.RData
9b358dfd9210aec26b9017eaa925dbdf *demo/00Index
959fe3c7db5b1e48763fb9674aaec1e3 *demo/biosurvbook.R
8df770993ef900b110b71a15d2d73c3a *demo/cost.R
14eac582eb4a68c582e5f8140ec70d81 *demo/fluBYBW.R
91b32c4a3530fd97687310b61f183722 *demo/v77i11.R
cfff3dd3f593b008473c88f01328b05a *inst/CITATION
42ac647af12a747a5f0bf223cd9447c5 *inst/NEWS.Rd
98e8fda1853dceb3d9b58b920efcef6d *inst/THANKS
86fd13a3a3c9423f3afb133efdb286f0 *inst/doc/glrnb.R
2470566a52c9e1847131bee3e4a06327 *inst/doc/glrnb.Rnw
5fa6c23a8b3ca06616e27a932c6aac4c *inst/doc/glrnb.pdf
d33e4297b8604a5aa07959b75ac89da6 *inst/doc/hhh4.R
e88da7024531aaedbe2e3625b5116f00 *inst/doc/hhh4.Rnw
9656c46b5813e71686d4e8be41c03807 *inst/doc/hhh4.pdf
1c017a783e5384ef35265aed344e6e3b *inst/doc/hhh4_spacetime.R
e2f88c0ea40839feeb65592066b3d4bc *inst/doc/hhh4_spacetime.Rnw
5ab1a7c550a35a8aa08929e5200aa382 *inst/doc/hhh4_spacetime.pdf
3f77e0e0fa30846c60d5fc11f5b54f0d *inst/doc/monitoringCounts.R
f6d4cf9ce2d80ce03556853454bfffcc *inst/doc/monitoringCounts.Rnw
31f199c575b30042c4245acaf6a92d82 *inst/doc/monitoringCounts.pdf
9d80c53b804ec87db1b44505ffa21f47 *inst/doc/surveillance.R
07e3ba5f073c83057628ddef7211794e *inst/doc/surveillance.Rnw
428e2f4c10dee460e604eaffd38c42ad *inst/doc/surveillance.pdf
fe0cf08a224669c084910c5c19f6ff4a *inst/doc/twinSIR.R
ef7ee554a4edffd0936e5a656e5cb2de *inst/doc/twinSIR.Rnw
0d469e518b37080790eddd06d8ada4ae *inst/doc/twinSIR.pdf
109ca37a5ce88c38aa9d524e81bd8645 *inst/doc/twinstim.R
06cbdbd2c1f5fbbd5b603fa99ba5e8b5 *inst/doc/twinstim.Rnw
2386e2ae9179507ea31d298cd684e960 *inst/doc/twinstim.pdf
01e880f0dcb85b78a1c2be29862d464f *inst/extdata/counts_flu_BYBW.txt
7368155ea8525f22a4039c99101fa209 *inst/extdata/neighbourhood_BYBW.txt
57facd5cc2cdaadf18538e6742158b88 *inst/extdata/population_2001-12-31_BYBW.txt
3cfa159d1f9810e948068fb7831fdc2c *inst/extdata/salmonella.agona.txt
6eb9544879e01cf717999ddf45b1b6b3 *inst/jags/bhpm.bugs
61faaa303d7c5e4e88278dc1026f1463 *inst/shapes/berlin.dbf
6d61b4a4e2ba0197aed611390250f5a8 *inst/shapes/berlin.sbn
4215c8c5fc9aa22fa9277267cbe20746 *inst/shapes/berlin.sbx
57a46753e569f12f8aa48540429444d4 *inst/shapes/berlin.shp
2a29a0fdf04dc5a01a3614ef1096f7e5 *inst/shapes/berlin.shx
aaba0229b93bd6fac056f5081a3e1f35 *inst/shapes/districtsD.RData
351fe957e8d3d2d241581fe6e0f6432f *man/LRCUSUM.runlength.Rd
da3bc824858d6e87e0431999212fd5b9 *man/MMRcoverageDE.Rd
4cf4eca7a105c2e9462693e77a0eabf0 *man/R0.Rd
050377f810eaa62351b28927e9374dc7 *man/abattoir.Rd
2848385412e408f9e1bed525e6e11e97 *man/addFormattedXAxis.Rd
81ed4b504edd3ff054223a111a598e4b *man/addSeason2formula.Rd
b65347920ac7f8914c5eb4b50a602f79 *man/aggregate.disProg.Rd
88a75c42b99a537c63e7e4a904560c12 *man/algo.bayes.Rd
f8b6ab06e4d27d44a58be803b578faad *man/algo.call.Rd
bd37a85505aa53d1e8007be27e8cfb0f *man/algo.cdc.Rd
8a2406825225cbd7b94519dac6ce3820 *man/algo.compare.Rd
5b937a700198de09efdf616cf95ea079 *man/algo.cusum.Rd
f9472865f2e749cfd96f1a16e03b38fb *man/algo.farrington.Rd
ddcf60189b825884760b09415b2f3ab0 *man/algo.farrington.assign.weights.Rd
7bb1f601a5b9c9f0066794189b8b9e17 *man/algo.farrington.fitGLM.Rd
eb25344d041f96e3caa276d0f03cce9c *man/algo.farrington.threshold.Rd
714c9e6d7e0b1e2b08adfcf5153c04d4 *man/algo.glrnb.Rd
b506a2cf3085ee2494dda7d51d96346c *man/algo.hmm.Rd
12bf0e233c5786c27d266acb083b6424 *man/algo.outbreakP.Rd
a03ce41b3d94f8e29938eb451f65e540 *man/algo.quality.Rd
9aa31b24d5cacb427a415a9918ae682a *man/algo.rki.Rd
755421ca2ecd4eb0a405934754f4eadc *man/algo.rogerson.Rd
f4f6d4df5bf74c1f371a618c27760603 *man/algo.summary.Rd
3a822ba5ef9fe15475276f2055211def *man/algo.twins.Rd
eeaee3c5d0e839ef8d6ef83358ffc575 *man/all.equal.Rd
e67c69a89d7f343368d411318ea15e3f *man/animate.Rd
2f342e80d91a6dbe78e7e24537c6d3fd *man/anscombe.residuals.Rd
785860fc36b43605c8b250287cd51081 *man/arlCusum.Rd
a5e1f7cf7a4ce082d293e954f2329807 *man/backprojNP.Rd
09fb22575940aa22c3c155be4ea1ffc8 *man/bestCombination.Rd
0d2e08a56fe27dd709c66897c94943b9 *man/boda.Rd
34485f58f151d34ba3f1dcfa1a39e660 *man/bodaDelay.Rd
0874769b413334054106966019cf51b9 *man/calibration.Rd
2b0798d1c1710dd011826721277b3433 *man/campyDE.Rd
c979567e2086ca3f6168532824de918f *man/categoricalCUSUM.Rd
bc8ebb1ba43f41e23b50592440d554dd *man/checkResidualProcess.Rd
5d88a6b64a591a16ff7ae3bb6d0640d9 *man/clapply.Rd
27ef79270ab1c247cc00247a25d96b65 *man/coeflist.Rd
0e12d409a9eab25d226f71311603d264 *man/create.disProg.Rd
dda9e5df2c4f4d37b805888fc3c98896 *man/deleval.Rd
c629a963f9544c4a04d5317179f49c89 *man/disProg2sts.Rd
248e54773fc5c72846cddac922c21356 *man/discpoly.Rd
7e557bf7fb1f3dbe5a489e40d68a325c *man/earsC.Rd
a894140fb321b9d9ba6224f3b9a4a4dc *man/epidata.Rd
2cb5260f6ebbb2542ced23e6757cd218 *man/epidataCS.Rd
64db34549872d56d58887a10cd72e589 *man/epidataCS_aggregate.Rd
6a61e163424b50bb480281a0d5210284 *man/epidataCS_animate.Rd
0ff2c126e9c41509f69d9dd9acecb79c *man/epidataCS_permute.Rd
8ce7a00d4f928d8d2ded1389202847aa *man/epidataCS_plot.Rd
7bcbfeb759bc26af095d44f5f91b4352 *man/epidataCS_update.Rd
ae46544e4317c47bb5fb5485242c8136 *man/epidata_animate.Rd
36024c712cad9831fbad480990582fa0 *man/epidata_intersperse.Rd
7f561161b773aa45f18e830e134562d0 *man/epidata_plot.Rd
d2b4122305af3b0f63e2ae4054678422 *man/epidata_summary.Rd
f660b9a5c95cb8dccef722142b27d61c *man/estimateGLRNbHook.Rd
ebd996999531f5af119ee0372e72dee6 *man/fanplot.Rd
7c4874b911129a9605d30d402d65a53d *man/farringtonFlexible.Rd
08907427c5e4283cebd965c020e5c314 *man/find.kh.Rd
3c3d71c027b25bd7e483d9a1d67bc46b *man/findH.Rd
02198b044625da79eea751c4ee82481f *man/findK.Rd
33cfb6c5c1247c3cb5e4287902648bb7 *man/fluBYBW.Rd
e19481324bcb1f9d401c2119c56014f0 *man/formatDate.Rd
c5abd4fb24364663f13b98295ac4c169 *man/formatPval.Rd
bbc2674f910b27a89531cb996da4bd83 *man/glm_epidataCS.Rd
8db35442a16ffe91262acdcc807aa91f *man/ha.Rd
d0d29c129f9af27916de1d174476d3aa *man/hagelloch.Rd
8066e0538b9ee18e9b2931bdfaa84719 *man/hcl.colors.Rd
7a992f9f050d817daf9f0246b1e3fbbb *man/hepatitisA.Rd
29ab27ec799e6e97893a238a805e5594 *man/hhh4.Rd
58e531e8f6dcdbf3b208bedfd5ac2bb7 *man/hhh4_W.Rd
f9e8e43bedfa2dfeb84960c46eb1d3f9 *man/hhh4_W_utils.Rd
fdca3cebc9604fb81337f01f95814376 *man/hhh4_formula.Rd
55cb7018dc49e8f0e6e49b6749488d3e *man/hhh4_internals.Rd
fc5c69b34c944409deb60b42697be848 *man/hhh4_methods.Rd
36b8d66c4f2266b639582aab567151d8 *man/hhh4_plot.Rd
5b8d9ba6fd3c5cc3139568480c0fd2e2 *man/hhh4_predict.Rd
9d9db5cbc2d3f5641720e0119fa39a6a *man/hhh4_simulate.Rd
37e8818db7bc3b3eb7bc989df91cabb9 *man/hhh4_simulate_plot.Rd
5596cb7d6cb4bec5190cf856fdd8cf6e *man/hhh4_simulate_scores.Rd
7ba1bb375aeab457b03623aedbad22af *man/hhh4_update.Rd
330bff15ff5b6031426a95cdc3fd1043 *man/hhh4_validation.Rd
8f810db3c775c085ade43c8819330eb8 *man/husO104Hosp.Rd
cf1bd01c5beee2a8867e383f2e97b960 *man/imdepi.Rd
dc60f2ca5eae07ed235dd063c28175af *man/imdepifit.Rd
cc422432b310f004e3d5991bef193c17 *man/influMen.Rd
90e5837327aa060a5a776febe68205da *man/inside.gpc.poly.Rd
df35457995a21853415e9af9e3ada813 *man/intensityplot.Rd
b07fe8fb0d63949b7f9d02078df4cea3 *man/intersectPolyCircle.Rd
9d04dc30b863d2a5961247f906ec770c *man/isScalar.Rd
edcec8233e8b0490c5996c3deb950174 *man/isoWeekYear.Rd
e9ed8a8aeea3a2916aa65b00653ca557 *man/knox.Rd
e523030beec583706e157cbb31ce06fb *man/ks.plot.unif.Rd
11a9c37d74443482dfc40621e25a9bee *man/layout.labels.Rd
9624bee6d800b64b6738f9c907adfd67 *man/linelist2sts.Rd
b228be93ee4db7f4458d18a3b5658490 *man/m1.Rd
a63d24fd9d091edd1b287d6318ddc918 *man/magic.dim.Rd
10ac2d54bf7cd46d59afbeff8f9ff3fb *man/makeControl.Rd
cc5b26350902fbcfb6adba326a4f8512 *man/marks.Rd
87815f879d5777f355a16354127e2e57 *man/measles.weser.Rd
05762d3db1664ce2a4ac72ef8dd7f212 *man/measlesDE.Rd
f4a18ebcd09b7ef61ef79b3a1c6f4037 *man/meningo.age.Rd
5a55fd7ff66adffbc1f4df017a422acd *man/momo.Rd
157a81a24e3f716677b18c2e4a5e0290 *man/multiplicity.Rd
efa8f148f8057a40797ecd49e56374e8 *man/multiplicity.Spatial.Rd
0c66f14de0b9d7713536fbc4d621319b *man/nbOrder.Rd
ff3dca3f7c43c3e703569c25c9930046 *man/nowcast.Rd
2684bc74f6898b7f6a8ccda0ff7325b1 *man/pairedbinCUSUM.Rd
4ff95723c9481aed610d0b1e810039dc *man/permutationTest.Rd
4811ad6bf8795ac03660e55fbbadf561 *man/pit.Rd
44d63f2f2c26cedc8ad8870cee11f5d3 *man/plapply.Rd
1132b404312195dc55bc1e05c602431f *man/plot.atwins.Rd
9aa0c447874ecb24af9a8ccbe158357a *man/plot.disProg.Rd
c98c3c95af334ee5775444d6c62ab490 *man/plot.survRes.Rd
5b1ff526f5617d7c35627cc7d26b9298 *man/poly2adjmat.Rd
48cdc7c2ff6188011fdd8d2b80c0b1af *man/polyAtBorder.Rd
8fcfd9d601274b15b0a2f2caa71b218c *man/primeFactors.Rd
747966188aa39b5600347f2d98d32aae *man/print.algoQV.Rd
172a18b1405eeafce04a8e024987d8a3 *man/ranef.Rd
b46adeab66b32aa5d6b491505fc5e2a3 *man/refvalIdxByDate.Rd
92f2406fd4e5054765f773c694681498 *man/residualsCT.Rd
a1250eb509f187d201ee78fec0493dfd *man/rotaBB.Rd
7831a80a59e3bc6a8e91a79beede0e02 *man/runifdisc.Rd
7a98ef0577af730874fae7ba3f654f7d *man/salmAllOnset.Rd
6b358e25a5c89bf0c0ccfd9d5242a614 *man/salmHospitalized.Rd
9f591f22a9787714196f8666077d70a3 *man/salmNewport.Rd
88281097eee429efba0848a940880151 *man/salmonella.agona.Rd
13b2a4a417b50c7b4dbb1903dfab6f68 *man/scale.gpc.poly.Rd
5917b743a31ee99fdd29ca14dd8ae405 *man/scores.Rd
360616c5ec2d33ffd151c4bcd4475bfc *man/shadar.Rd
851df66c37bee39c65a35828dc53977f *man/sim.pointSource.Rd
7b234e3fd1d07a268a6e33ffe065f21f *man/sim.seasonalNoise.Rd
cb11e9ab99de788f7cc92747e342349b *man/stK.Rd
bb60b62230fdc91b7f6ad6a09d9bfc02 *man/stcd.Rd
f288e826c37dd9805a9f8b57b1bf1461 *man/sts-class.Rd
873204f207dfb51caaa746ee2bd10fdc *man/stsAggregate.Rd
df53a0b596017c56bb4250406a18caf4 *man/stsBP-class.Rd
d4bc0f219c87e0f18697449e89115793 *man/stsNC-class.Rd
3ce59ca4c559df7119fb5135ea0982ca *man/stsNClist_animate.Rd
dbaec1ff48746c676346c06b459111ce *man/stsNewport.Rd
819cbd32ad7b842a2f9c560c4d1737ee *man/stsSlots.Rd
d5e4f5446da8cdcd0a3d40fd8fd4bd82 *man/stsXtrct.Rd
9abf305c9d37a2a65f3b67a78b84c8f6 *man/sts_animate.Rd
b9d74adc5b1197257a5ee1717d3af17a *man/sts_creation.Rd
c7d61767babf3ee0a9f82d1b9a24fa0d *man/sts_ggplot.Rd
199cf4042e5f43e712f1bdd06a283f3a *man/sts_observation.Rd
0223c2f41f0232fd62fba15122b5d460 *man/sts_tidy.Rd
99ce690540fa51cdb57d7297e19900c3 *man/stsplot.Rd
bfa9db314f6ac81272e9776c71f0bd72 *man/stsplot_space.Rd
6e5ac4c2e1665d2a7cd3d116fe7b1906 *man/stsplot_spacetime.Rd
78290e77f6b6002f85ba730ccab2fcf1 *man/stsplot_time.Rd
e52ba35f59e05bd7d1929377aa19fcb9 *man/surveillance-defunct.Rd
339881ea8df44f353b2cff61d6e91442 *man/surveillance-deprecated.Rd
7eb5fac809d8cfb60b41ea9f14227572 *man/surveillance-package.Rd
d1e4fc81752c33156ae95c2f8712f2a9 *man/surveillance.options.Rd
1cb7ec5f0e9ca67546e8859d2f1de0d3 *man/toLatex.sts.Rd
c53dd9ba0f19aacb872241e3b8d0bac4 *man/twinSIR.Rd
7a7c977c0e0b512e2c30b096d05377de *man/twinSIR_cox.Rd
a60c1b1d277524ad5f92e8ff879b0be8 *man/twinSIR_exData.Rd
d2759f1a4bd57ceda4a84e0cad4ad59a *man/twinSIR_intensityplot.Rd
ac127bfd7a894989c7f62ca19f19a713 *man/twinSIR_methods.Rd
465865dfa7ef7034cd01ab5ec249d478 *man/twinSIR_profile.Rd
6dfcd7c35b1e9eeedeaea2c1f82de773 *man/twinSIR_simulation.Rd
262b0594893201e6fcf7d82ae9ecb4a7 *man/twinstim.Rd
a4a7a8339f3a742a8195838bc8b73d93 *man/twinstim_epitest.Rd
19d0a627f65dc4f87d38e1296ef9c52a *man/twinstim_iaf.Rd
64af818d69a2d1b67801af21f612d705 *man/twinstim_iafplot.Rd
e36647b767ef7c23a9e4c20e1097aaa1 *man/twinstim_intensity.Rd
0a35371d58ab0cb7bc5f983b4d4befe8 *man/twinstim_methods.Rd
30954d87702654fac94fb92a7170e848 *man/twinstim_plot.Rd
deccdbc7fadc8a8ab8f543917de0df87 *man/twinstim_profile.Rd
b855e3b6b307ac0933aa0e1f4e473944 *man/twinstim_siaf.Rd
c625195f02f957511cfe5a8d6cef950a *man/twinstim_siaf_simulatePC.Rd
9ada82cd81353b36f1da8034e3a8f628 *man/twinstim_simEndemicEvents.Rd
3587d1339e750bff357ae4f892e2d292 *man/twinstim_simulation.Rd
779060593a223d40c3081cc5ce97d401 *man/twinstim_step.Rd
3977925a2d40feb47561093bd350f57b *man/twinstim_tiaf.Rd
c69279fdb57e6373842394a5b4cde78c *man/twinstim_update.Rd
6df6bf11745b7358ca3c3d9a3f5ecd13 *man/unionSpatialPolygons.Rd
f2fcddd15d55f553416d92ab103c9465 *man/untie.Rd
89c71b586228b1e556437d2187c816a4 *man/wrap.algo.Rd
ce6f1e7c93f38a57ebc8d23784649d77 *man/xtable.algoQV.Rd
382c0cb7667e12641bbe5fd11a082880 *man/zetaweights.Rd
95d071f4a7327cf317d43a3a188e7333 *src/RcppExports.cpp
b03b552e9456a164ef4b99a3a73f1e24 *src/backproj.cc
ae5151fbc75f1dc0886caff8ce56db88 *src/determineSources.cc
591f53f4e940f79fae3422b45238e815 *src/gsl_wrappers.h
aa191af5683bfb3c220bef07e5ea741f *src/init.c
5fc6609f34a21da62930ea7f90fefaeb *src/ks.c
b88cfaeae45fcb3d8c9d4a5e3e2a27ed *src/stcd-assuncaocorrea.cc
c7e10733c5a4a27293f72ae939935163 *src/stcd-assuncaocorrea.h
a84e49b0891032b6966245d928d3ad18 *src/surveillance.c
3d2fd19412d9ebc374e6d3197680ff94 *src/twins.cc
8f53a7d47c6492ddc03e0e3f08af7a2c *src/twinstim_siaf_polyCub_iso.c
868e5d45f081b97845cb0843d26d09bb *tests/testthat/test-algo.glrnb.R
ac7f8c824c94d65ea7c1cf71794a5df9 *tests/testthat/test-bodaDelay.R
80e3e4ed5012169b68e69f0c1a57bceb *tests/testthat/test-calibration.R
b5e5f94cc6ab38600f8dc292e5702527 *tests/testthat/test-createLambda.R
934ae15a527db2b63c78331fdb98d509 *tests/testthat/test-determineSources.R
4681a416f8c6d5c2c807c63f6b4de135 *tests/testthat/test-earsC.R
730db86056a458ba4de6e4a92eea8614 *tests/testthat/test-farringtonFlexible.R
8e3c562317e1e4f06f165c01a723ce9c *tests/testthat/test-formatDate.R
c6dabbf90e9db8aa7314c267fd4d8446 *tests/testthat/test-hhh4+derivatives.R
45c55df2b6fd0384f33172fef63c1fa3 *tests/testthat/test-hhh4_ARasNE.R
e92115004f23c7fc20a0a552cd6c9018 *tests/testthat/test-hhh4_NegBinGrouped.R
e1051ecf1cbb778d01df69c6b00ac283 *tests/testthat/test-hhh4_offsets.R
747445546c91691be896c2f56069596b *tests/testthat/test-hhh4_weights.R
1ee320c714e601a5867fd53d17f7828f *tests/testthat/test-nbOrder.R
cf09694c1c9a7d6d0bcdf548155a574a *tests/testthat/test-plapply.R
9187eaf509a5f5a7d0e336c0895c90e4 *tests/testthat/test-siafs.R
9d1bb1687954e12fc5049605a4d859e2 *tests/testthat/test-sts.R
fe2feecf7c827ef7404801c1a22aae61 *tests/testthat/test-tiafs.R
39f30f8c12c9c4d9f18cfc518f238f01 *tests/testthat/test-toLatex.sts.R
b0b804273cc346be4f2e0e39b41eb225 *tests/testthat/test-twinstim_score.R
115973170347b95f626c9204eeeb66a3 *tests/tinytest.R
2470566a52c9e1847131bee3e4a06327 *vignettes/glrnb.Rnw
b1c985ebb611614fc547c4c9ce227985 *vignettes/hhh4-cache.RData
e88da7024531aaedbe2e3625b5116f00 *vignettes/hhh4.Rnw
71a631c17142aaba9f6efe3c2a848215 *vignettes/hhh4_spacetime-cache.RData
e2f88c0ea40839feeb65592066b3d4bc *vignettes/hhh4_spacetime.Rnw
76290d63ad475c49790994239303b35c *vignettes/monitoringCounts-cache/boda.RData
ec28746025727a89828f16cb0cb8ff36 *vignettes/monitoringCounts-cache/boda.covars.RData
a0517d2448a2a64e964b1446ebad59e1 *vignettes/monitoringCounts-cache/fPlot.R
664394dce780b1fd632e74f6801fb445 *vignettes/monitoringCounts-cache/fPlot1.pdf
d34a1009c327f20686d10285dafcd151 *vignettes/monitoringCounts-cache/fPlot2.pdf
1c2e76beabaee793efc68c30cc25b86c *vignettes/monitoringCounts-cache/pMC.RData
5323bb86df0e995032a98515aea404fa *vignettes/monitoringCounts-cache/pMarkovChain.RData
f6d4cf9ce2d80ce03556853454bfffcc *vignettes/monitoringCounts.Rnw
a9ab2abc6a6ffb5673d71b1315e1f357 *vignettes/monitoringCounts.bib
05ddd50a517d037df200955e62a6ec68 *vignettes/references.bib
b20497d605781ef73fd4887027c40c30 *vignettes/surveillance-cache.RData
c7e1749d06863844f25d5fee4e2f4672 *vignettes/surveillance-hmm.pdf
07e3ba5f073c83057628ddef7211794e *vignettes/surveillance.Rnw
01099bf54aeaf8a031440283443e994a *vignettes/twinSIR-cache.RData
ef7ee554a4edffd0936e5a656e5cb2de *vignettes/twinSIR.Rnw
de94eb2eaca1e446d38183c522688e7d *vignettes/twinstim-cache.RData
06cbdbd2c1f5fbbd5b603fa99ba5e8b5 *vignettes/twinstim.Rnw
